Fig 1: PCSK9 SNP rs662145 C > T is associated with altered expression of IL36 in cultured keratinocytes and nonlesional skin.(A) In cultured keratinocyte cell lines and nonlesional skin, PCSK9 SNP rs662145 C > T HOMO phenotypes expressed higher levels of IL36B compared with PCSK9 SNP rs662145 C > T HET phenotypes. Box-and-whisker plots show normalized PCSK9 expression (log transformed reads on y axis). Each dot represents 1 keratinocyte line or skin sample. Differential gene expression was calculated using DESeq2. FDR-adjusted P values are displayed on each plot. (B) In cultured keratinocyte cell lines and nonlesional skin, PCSK9 SNP rs662145 C > T HOMO phenotypes expressed higher levels of IL36G compared with PCSK9 SNP rs662145 C > T HET phenotypes. HOMO, homozygous; HET, heterozygous.
Fig 2: PCSK9 expression negatively correlates with IL36B and IL36G expression in keratinocytes and skin.(A) In cultured keratinocyte cell lines, PCSK9 expression negatively correlated with IL36B and IL36G expression. PCSK9 expression did not correlate with PGK1 expression, a housekeeping gene. In these plots, each dot represents an in vitro cultured keratinocyte cell line under a different culture condition (control, IL-4, IL-13, IL-17A, IFN-a, IFN-?, TNF-a, IL-4 and IL-13, IL-17A and IFN-?, IL-17A, and TNF-a). Normalized log2 transformed reads for each gene are plotted on the x axis and y axis. Pearson’s correlation coefficients and P values are displayed on each plot. (B) Epidermal expression of PCSK9 and IL36G. Representative pictures of an IHC staining for PCSK9 and IL36G as well as the matching isotype controls in lesional skin of a patient with psoriasis (upper row) and healthy control nonlesional skin (lower row). The single arrow points to the basal layer. Double arrows point to the granular layer. Scale bar: 100 µm.
Fig 3: PCSK9 expression is negatively and directly related to IL36B and IL36G expression.(A) Single-cell sequencing of psoriatic nonlesional and lesional skin (n = 9). The UMAP method was used to create 2-dimensional representation of the resulting data. Keratinocyte populations were identified by the expression levels of established keratinocyte markers (red, basal layer keratinocytes, DST high; green, spinous layer keratinocytes, KRT5 low and KLK7 low; and blue, granular layer keratinocytes, KLK7 high). PCSK9- and IL36G-expressing cells are depicted in maroon. (B) Expression of IL36G in individual basal, spinous, and granular layer keratinocytes shown as box-and-whisker plots of log2 transformed gene expression. P values were calculated for each data set using 1-way ANOVA. (C) PCSK9-positive keratinocytes were parsed into 2 groups, PCSK9-high and PCSK9-low (x axis). Box-and-whisker plots of indicated intracellularly expressed genes are plotted on the y axis (log2 reads). P values were calculated using Student’s t test. (D) Box plots showing the effects of in vitro siRNA knockdown of PCSK9 in keratinocyte cell lines on IL36B and IL36G. PCSK9 (positive control) and PGK1 (negative control) expression is also shown for scrambled siRNA transfected and PCSK9 siRNA transfected cultures. Each dot represents an independently cultured and independently transfected HaCaT keratinocyte cell line (n = 3). P values were calculated with Student’s t test.
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